esmfold2.com
ESMFold2 API Code Generator
ESMFold2 Tools is a free, browser-local guide and toolkit for learning ESMFold2, generating starter API code, preparing inputs, and inspecting mmCIF/PDB confidence outputs.
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6
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About tool
ESMFold2 Tools is a curated, independent guide and browser-local toolkit focused on Biohub’s ESMFold2 workflow. It helps you learn what ESMFold2 does, generate safe starter code locally (with token placeholders), and interpret structure-confidence outputs like pLDDT and PAE.
Use the code generator to create Python starter snippets for common prediction setups (single protein, and example templates that include RNA/DNA or ligand-like components). The generated code is designed so you don’t paste private Biohub tokens into the page—tokens are referenced via environment variables.
For hands-on inspection, the tools include browser-based viewers and explanations that help you examine mmCIF/PDB results and better understand confidence reporting, without running hosted predictions. The Track A MVP keeps sequencing private by avoiding uploads and avoiding hosted result generation on this site.
Do the free tools run ESMFold2 predictions on this site?
No. The Track A MVP focuses on browser-local guidance and utilities—code generation, input preparation, and file inspection. Hosted prediction is intentionally left out until a later phase.
Does ESMFold2 Tools collect my Biohub token or private sequences?
No. Token handling is done via placeholders and environment variables, and the free tools do not collect sequences or private Biohub tokens.
Can I use the code generator to run predictions from my own environment?
Yes. The code generator provides starter Python templates you can run locally, with instructions to verify the current model ID and update imports/client calls to match official examples.
What confidence outputs can I interpret with these tools?
You’ll find guidance for understanding pLDDT and PAE outputs, including how to translate them into clearer, report-ready wording.
What file formats can I inspect with the browser tools?
You can inspect ESMFold2 outputs such as mmCIF and PDB, using the provided browser-based viewing and explanation helpers.
Is this an official Biohub website?
No. It’s an independent guide and browser-local toolkit that links to official Biohub sources for model and API details.